Nanoindentation cycles measured with an atomic force microscope on hydrated collagen fibrils exhibit a rate-independent hysteresis with return point memory. This previously unknown energy dissipation mechanism describes in unified form elastoplastic indentation, capillary adhesion, and surface leveling at indentation velocities smaller than 1 μm s-1, where viscous friction is negligible. A generic hysteresis model, based on force-distance data measured during one large approach-retract cycle, predicts the force (output) and the dissipated energy for arbitrary indentation trajectories (input). While both quantities are rate independent, they do depend nonlinearly on indentation history and on indentation amplitude.