Absolute structure determination of Berkecoumarin by X-ray and electron diffraction

Acta Crystallogr C Struct Chem. 2024 May 1;80(Pt 5):143-147. doi: 10.1107/S2053229624003061. Epub 2024 Apr 10.

Abstract

X-ray and electron diffraction methods independently identify the S-enantiomer of Berkecoumarin [systematic name: (S)-8-hydroxy-3-(2-hydroxypropyl)-6-methoxy-2H-chromen-2-one]. Isolated from Berkeley Pit Lake Penicillium sp., Berkecoumarin is a natural product with a light-atom composition (C13H14O5) that challenges in-house absolute structure determination by anomalous scattering. This study further demonstrates the utility of dynamical refinement of electron-diffraction data for absolute structure determination.

Keywords: Berkecoumarin; absolute structure determination; chromenone; coumarin; crystal structure; dynamical refinement; electron diffraction; microED; natural product.