Organ transformation by environmental disruption of protein integrity and epigenetic memory in Drosophila

PLoS Biol. 2024 May 28;22(5):e3002629. doi: 10.1371/journal.pbio.3002629. eCollection 2024 May.

Abstract

Despite significant progress in understanding epigenetic reprogramming of cells, the mechanistic basis of "organ reprogramming" by (epi-)gene-environment interactions remained largely obscure. Here, we use the ether-induced haltere-to-wing transformations in Drosophila as a model for epigenetic "reprogramming" at the whole organism level. Our findings support a mechanistic chain of events explaining why and how brief embryonic exposure to ether leads to haltere-to-wing transformations manifested at the larval stage and on. We show that ether interferes with protein integrity in the egg, leading to altered deployment of Hsp90 and widespread repression of Trithorax-mediated establishment of active H3K4me3 chromatin marks throughout the genome. Despite this global reduction, Ubx targets and wing development genes preferentially retain higher levels of H3K4me3 that predispose these genes for later up-regulation in the larval haltere disc, hence the wing-like outcome. Consistent with compromised protein integrity during the exposure, the penetrance of bithorax transformations increases by genetic or chemical reduction of Hsp90 function. Moreover, joint reduction in Hsp90 and trx gene dosage can cause bithorax transformations without exposure to ether, supporting an underlying epistasis between Hsp90 and trx loss-of-functions. These findings implicate environmental disruption of protein integrity at the onset of histone methylation with altered epigenetic regulation of developmental patterning genes. The emerging picture provides a unique example wherein the alleviation of the Hsp90 "capacitor function" by the environment drives a morphogenetic shift towards an ancestral-like body plan. The morphogenetic impact of chaperone response during a major setup of epigenetic patterns may be a general scheme for organ transformation by environmental cues.

MeSH terms

  • Animals
  • Chromatin / metabolism
  • Chromosomal Proteins, Non-Histone / genetics
  • Chromosomal Proteins, Non-Histone / metabolism
  • Drosophila Proteins* / genetics
  • Drosophila Proteins* / metabolism
  • Drosophila melanogaster* / genetics
  • Drosophila melanogaster* / metabolism
  • Epigenesis, Genetic*
  • Epigenetic Memory
  • Gene Expression Regulation, Developmental
  • Gene-Environment Interaction
  • HSP90 Heat-Shock Proteins* / genetics
  • HSP90 Heat-Shock Proteins* / metabolism
  • Histones* / metabolism
  • Homeodomain Proteins / genetics
  • Homeodomain Proteins / metabolism
  • Larva / genetics
  • Larva / growth & development
  • Larva / metabolism
  • Transcription Factors
  • Wings, Animal* / growth & development
  • Wings, Animal* / metabolism

Substances

  • Drosophila Proteins
  • Histones
  • HSP90 Heat-Shock Proteins
  • trx protein, Drosophila
  • Chromosomal Proteins, Non-Histone
  • histone H3 trimethyl Lys4
  • Ubx protein, Drosophila
  • Chromatin
  • Homeodomain Proteins
  • Transcription Factors

Grants and funding

This work was supported by the Sir John Templeton Foundation (40663 to YS; 764 61122 to YS), a research grant from the Fannie Sherr Fund (to YS), and a research grant from the Estate of Benjamin Carasso (to YS). The funders didn’t play any role in the study design, data collection and analysis, decision to publish, or preparation of the manuscript.