Identification of salt tolerance-associated presence-absence variations in the OsMADS56 gene through the integration of DEGs dataset and eQTL analysis

New Phytol. 2024 Aug;243(3):833-838. doi: 10.1111/nph.19887. Epub 2024 Jun 6.

Yuchao Cui^#^{1

2}, Yarong Lin^#^{1

3}, Hua Wei^#³, Yuehan Pan^#², Huiying He³, Hongge Qian³, Longbo Yang³, Xinglan Cao^{3

4}, Zhipeng Zhang³, Xiaosi Zeng², Tianyi Wang³, Wenchuang He³, Xiangpei Liu³, Chuanlin Shi³, Qiaoling Yuan³, Xiaoman Yu³, Liang Chen², Feng Wang¹, Yiwang Zhu^{1

3}, Qian Qian^{3

5

6}, Lianguang Shang^{3

5}

¹ Institute of Biotechnology, Fujian Academy of Agricultural Sciences/Fujian Provincial Key Laboratory of Genetic Engineering for Agriculture, Fuzhou, 350003, China.
² Xiamen Key Laboratory for Plant Genetics, School of Life Sciences, Xiamen University, Xiamen, 361102, China.
³ Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518124, China.
⁴ State Key Laboratory of Crop Stress Adaptation and Improvement, School of Life Sciences, Henan University, Kaifeng, 475000, China.
⁵ Yazhouwan National Laboratory, No. 8 Huanjin Road, Yazhou District, Sanya City, Hainan Province, 572024, China.
⁶ State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, 310000, Zhejiang, China.

^# Contributed equally.

No abstract available

Keywords: eQTL; pan‐genome; presence–absence variations (PAVs); rice; salt‐tolerant.

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