K128 ubiquitination constrains RAS activity by expanding its binding interface with GAP proteins

EMBO J. 2024 Jul;43(14):2862-2877. doi: 10.1038/s44318-024-00146-w. Epub 2024 Jun 10.

Abstract

The RAS pathway is among the most frequently activated signaling nodes in cancer. However, the mechanisms that alter RAS activity in human pathologies are not entirely understood. The most prevalent post-translational modification within the GTPase core domain of NRAS and KRAS is ubiquitination at lysine 128 (K128), which is significantly decreased in cancer samples compared to normal tissue. Here, we found that K128 ubiquitination creates an additional binding interface for RAS GTPase-activating proteins (GAPs), NF1 and RASA1, thus increasing RAS binding to GAP proteins and promoting GAP-mediated GTP hydrolysis. Stimulation of cultured cancer cells with growth factors or cytokines transiently induces K128 ubiquitination and restricts the extent of wild-type RAS activation in a GAP-dependent manner. In KRAS mutant cells, K128 ubiquitination limits tumor growth by restricting RAL/ TBK1 signaling and negatively regulating the autocrine circuit induced by mutant KRAS. Reduction of K128 ubiquitination activates both wild-type and mutant RAS signaling and elicits a senescence-associated secretory phenotype, promoting RAS-driven pancreatic tumorigenesis.

Keywords: NF1; RAS Interactome; RAS Signaling; Senescence-Associated Secretory Phenotype; Ubiquitination.

MeSH terms

  • Animals
  • Cell Line, Tumor
  • GTP Phosphohydrolases / genetics
  • GTP Phosphohydrolases / metabolism
  • Humans
  • Lysine / metabolism
  • Membrane Proteins / genetics
  • Membrane Proteins / metabolism
  • Mice
  • Neurofibromin 1
  • Protein Binding*
  • Protein Serine-Threonine Kinases / genetics
  • Protein Serine-Threonine Kinases / metabolism
  • Proto-Oncogene Proteins p21(ras)* / genetics
  • Proto-Oncogene Proteins p21(ras)* / metabolism
  • Signal Transduction
  • Ubiquitination*
  • p120 GTPase Activating Protein / genetics
  • p120 GTPase Activating Protein / metabolism
  • ras Proteins / genetics
  • ras Proteins / metabolism

Substances

  • Proto-Oncogene Proteins p21(ras)
  • KRAS protein, human
  • Protein Serine-Threonine Kinases
  • RASA1 protein, human
  • TBK1 protein, human
  • NF1 protein, human
  • p120 GTPase Activating Protein
  • GTP Phosphohydrolases
  • Lysine
  • NRAS protein, human
  • Membrane Proteins
  • ras Proteins
  • Neurofibromin 1