Unravelling biochemical and structural features of Bacillus licheniformis GH5 mannanase using site-directed mutagenesis and high-resolution protein crystallography studies

Int J Biol Macromol. 2024 Aug;274(Pt 2):133182. doi: 10.1016/j.ijbiomac.2024.133182. Epub 2024 Jun 15.

Abstract

Glycoside hydrolase family 5 (GH5) encompasses enzymes with several different activities, including endo-1,4-β-mannosidases. These enzymes are involved in mannan degradation, and have a number of biotechnological applications, such as mannooligosaccharide prebiotics production, stain removal and dyes decolorization, to name a few. Despite the importance of GH5 enzymes, only a few members of subfamily 7 were structurally characterized. In the present work, biochemical and structural characterization of Bacillus licheniformis GH5 mannanase, BlMan5_7 were performed and the enzyme cleavage pattern was analyzed, showing that BlMan5_7 requires at least 5 occupied subsites to perform efficient hydrolysis. Additionally, crystallographic structure at 1.3 Å resolution was determined and mannoheptaose (M7) was docked into the active site to investigate the interactions between substrate and enzyme through molecular dynamic (MD) simulations, revealing the existence of a - 4 subsite, which might explain the generation of mannotetraose (M4) as an enzyme product. Biotechnological application of the enzyme in stain removal was investigated, demonstrating that BlMan5_7 addition to washing solution greatly improves mannan-based stain elimination.

Keywords: Bacillus licheniformis; Crystallographic structure; GH5_7 mannanase.

MeSH terms

  • Bacillus licheniformis* / enzymology
  • Bacillus licheniformis* / genetics
  • Bacterial Proteins / chemistry
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Catalytic Domain*
  • Crystallography, X-Ray
  • Hydrolysis
  • Mannans / chemistry
  • Mannans / metabolism
  • Mannosidases / chemistry
  • Mannosidases / genetics
  • Mannosidases / metabolism
  • Models, Molecular
  • Molecular Docking Simulation
  • Molecular Dynamics Simulation
  • Mutagenesis, Site-Directed*
  • Oligosaccharides
  • Protein Conformation
  • Substrate Specificity
  • Tetroses / chemistry
  • Tetroses / metabolism
  • beta-Mannosidase / chemistry
  • beta-Mannosidase / genetics
  • beta-Mannosidase / metabolism

Substances

  • Mannosidases
  • mannotetraose
  • Tetroses
  • Bacterial Proteins
  • Mannans
  • beta-Mannosidase
  • Oligosaccharides