Thermodynamic profiles for cotranslational trigger factor substrate recognition

Sci Adv. 2024 Jul 12;10(28):eadn4824. doi: 10.1126/sciadv.adn4824. Epub 2024 Jul 10.

Abstract

Molecular chaperones are central to the maintenance of proteostasis in living cells. A key member of this protein family is trigger factor (TF), which acts throughout the protein life cycle and has a ubiquitous role as the first chaperone encountered by proteins during synthesis. However, our understanding of how TF achieves favorable interactions with such a diverse substrate base remains limited. Here, we use microfluidics to reveal the thermodynamic determinants of this process. We find that TF binding to empty 70S ribosomes is enthalpy-driven, with micromolar affinity, while nanomolar affinity is achieved through a favorable entropic contribution for both intrinsically disordered and folding-competent nascent chains. These findings suggest a general mechanism for cotranslational TF function, which relies on occupation of the exposed TF-substrate binding groove rather than specific complementarity between chaperone and nascent chain. These insights add to our wider understanding of how proteins can achieve broad substrate specificity.

MeSH terms

  • Escherichia coli Proteins / chemistry
  • Escherichia coli Proteins / genetics
  • Escherichia coli Proteins / metabolism
  • Peptidylprolyl Isomerase
  • Protein Binding*
  • Protein Biosynthesis
  • Protein Folding
  • Ribosomes / metabolism
  • Substrate Specificity
  • Thermodynamics*

Substances

  • Escherichia coli Proteins
  • trigger factor, E coli
  • Peptidylprolyl Isomerase