Multi-omics analysis of green lineage osmotic stress pathways unveils crucial roles of different cellular compartments

Nat Commun. 2024 Jul 16;15(1):5988. doi: 10.1038/s41467-024-49844-3.

Abstract

Maintenance of water homeostasis is a fundamental cellular process required by all living organisms. Here, we use the single-celled green alga Chlamydomonas reinhardtii to establish a foundational understanding of osmotic-stress signaling pathways through transcriptomics, phosphoproteomics, and functional genomics approaches. Comparison of pathways identified through these analyses with yeast and Arabidopsis allows us to infer their evolutionary conservation and divergence across these lineages. 76 genes, acting across diverse cellular compartments, were found to be important for osmotic-stress tolerance in Chlamydomonas through their functions in cytoskeletal organization, potassium transport, vesicle trafficking, mitogen-activated protein kinase and chloroplast signaling. We show that homologs for five of these genes have conserved functions in stress tolerance in Arabidopsis and reveal a novel PROFILIN-dependent stage of acclimation affecting the actin cytoskeleton that ensures tissue integrity upon osmotic stress. This study highlights the conservation of the stress response in algae and land plants, and establishes Chlamydomonas as a unicellular plant model system to dissect the osmotic stress signaling pathway.

MeSH terms

  • Arabidopsis* / genetics
  • Arabidopsis* / metabolism
  • Cell Compartmentation
  • Chlamydomonas reinhardtii* / genetics
  • Chlamydomonas reinhardtii* / metabolism
  • Chloroplasts / metabolism
  • Gene Expression Regulation, Plant
  • Genomics
  • Multiomics
  • Osmotic Pressure*
  • Plant Proteins / genetics
  • Plant Proteins / metabolism
  • Proteomics
  • Signal Transduction*
  • Stress, Physiological
  • Transcriptome

Substances

  • Plant Proteins