Spatial transcriptomics reveals organized and distinct immune activation in cutaneous granulomatous disorders

J Allergy Clin Immunol. 2024 Nov;154(5):1216-1231. doi: 10.1016/j.jaci.2024.07.021. Epub 2024 Aug 3.

Abstract

Background: Noninfectious (inflammatory) cutaneous granulomatous disorders include cutaneous sarcoidosis (CS), granuloma annulare (GA), necrobiosis lipoidica (NL), and necrobiotic xanthogranuloma (NXG). These disorders share macrophage-predominant inflammation histologically, but the inflammatory architecture and the pattern of extracellular matrix alteration varies. The underlying molecular explanations for these differences remain unclear.

Objective: We sought to understand spatial gene expression characteristics in these disorders.

Methods: We performed spatial transcriptomics in cases of CS, GA, NL, and NXG to compare patterns of immune activation and other molecular features in a spatially resolved fashion.

Results: CS is characterized by a polarized, spatially organized type 1-predominant response with classical macrophage activation. GA is characterized by a mixed but spatially organized pattern of type 1 and type 2 polarization with both classical and alternative macrophage activation. NL showed concomitant activation of type 1, type 2, and type 3 immunity with a mixed pattern of macrophage activation. Activation of type 1 immunity was shared among, CS, GA, and NL and included upregulation of IL-32. NXG showed upregulation of CXCR4-CXCL12/14 chemokine signaling and exaggerated alternative macrophage polarization. Histologic alteration of extracellular matrix correlated with hypoxia and glycolysis programs and type 2 immune activation.

Conclusions: Inflammatory cutaneous granulomatous disorders show distinct and spatially organized immune activation that correlate with hallmark histologic changes.

Keywords: Sarcoidosis; granuloma annulare; granulomatous; necrobiosis; necrobiosis lipoidica; necrobiotic xanthogranuloma; spatial transcriptomics.

MeSH terms

  • Gene Expression Profiling
  • Granuloma / genetics
  • Granuloma / immunology
  • Granuloma Annulare / genetics
  • Granuloma Annulare / immunology
  • Humans
  • Macrophage Activation* / genetics
  • Macrophage Activation* / immunology
  • Macrophages / immunology
  • Male
  • Necrobiosis Lipoidica / genetics
  • Necrobiosis Lipoidica / immunology
  • Sarcoidosis* / genetics
  • Sarcoidosis* / immunology
  • Skin / immunology
  • Skin / pathology
  • Skin Diseases / genetics
  • Skin Diseases / immunology
  • Transcriptome*