Complete genome sequence of Pigmentibacter ruber isolated from a human patient in Japan

Masahiro Hayashi; Ayumi Niwa; Jun Yonetamari; Yoshinori Muto; Sodai Yokoyama; Motohiro Nakamura; Yuta Yokobori; Mizuki Ogawa; Rina Ichioka; Ryosuke Kikuchi; Hiroyuki Okura; Shinji Ogura; Nobuyuki Tetsuka; Hisashi Baba; Kaori Tanaka

doi:10.1128/mra.00133-24

Complete genome sequence of Pigmentibacter ruber isolated from a human patient in Japan

Microbiol Resour Announc. 2024 Sep 10;13(9):e0013324. doi: 10.1128/mra.00133-24. Epub 2024 Aug 20.

Authors

Masahiro Hayashi^{1

2

3}, Ayumi Niwa⁴, Jun Yonetamari^{4

5}, Yoshinori Muto², Sodai Yokoyama^{2

4}, Motohiro Nakamura⁴, Yuta Yokobori⁴, Mizuki Ogawa⁴, Rina Ichioka⁴, Ryosuke Kikuchi⁴, Hiroyuki Okura⁶, Shinji Ogura⁷, Nobuyuki Tetsuka⁸, Hisashi Baba⁹, Kaori Tanaka^{1

2

3}

Affiliations

¹ Institute for Glyco-core Research iGCORE, Gifu University, Gifu City, Gifu, Japan.
² Division of Anaerobe Research, Life Science Research Center, Gifu University, Gifu, Japan.
³ Gifu University Center for Conservation of Microbial Genetic Resource, Gifu, Japan.
⁴ Division of Clinical Laboratory, Gifu University Hospital, Gifu, Japan.
⁵ United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University, Gifu City, Gifu, Japan.
⁶ Department of Cardiology, Gifu University Graduate School of Medicine, Gifu, Japan.
⁷ Department of Emergency and Disaster Medicine, Gifu University Graduate School of Medicine, Gifu, Japan.
⁸ Department of Infection Control, Gifu University Graduate School of Medicine, Gifu, Japan.
⁹ Center for Nutrition Support and Infection Control, Gifu University Hospital, Gifu, Japan.

Abstract

Pigmentibacter ruber is a newly described bacterium belonging to the Silvanigrellaceae family that was isolated from human blood in 2021. We report the complete genome sequence of a clinical isolate of P. ruber (GTC16762) obtained from a human patient in Japan. Its genome contains a 3.6-Mb chromosome and three circular plasmids.

Keywords: Pigmentibacter ruber; clinical isolate.