Understanding the role of negative charge in the scaffold of an artificial enzyme for CO2 hydrogenation on catalysis

J Biol Inorg Chem. 2024 Sep;29(6):625-638. doi: 10.1007/s00775-024-02070-0. Epub 2024 Aug 29.

Abstract

We have approached the construction of an artificial enzyme by employing a robust protein scaffold, lactococcal multidrug resistance regulator, LmrR, providing a structured secondary and outer coordination spheres around a molecular rhodium complex, [RhI(PEt2NglyPEt2)2]-. Previously, we demonstrated a 2-3 fold increase in activity for one Rh-LmrR construct by introducing positive charge in the secondary coordination sphere. In this study, a series of variants was made through site-directed mutagenesis where the negative charge is located in the secondary sphere or outer coordination sphere, with additional variants made with increasingly negative charge in the outer coordination sphere while keeping a positive charge in the secondary sphere. Placing a negative charge in the secondary or outer coordination sphere demonstrates decreased activity by a factor of two compared to the wild-type Rh-LmrR. Interestingly, addition of positive charge in the secondary sphere, with the negatively charged outer coordination sphere restores activity. Vibrational and NMR spectroscopy suggest minimal changes to the electronic density at the rhodium center, regardless of inclusion of a negative or positive charge in the secondary sphere, suggesting another mechanism is impacting catalytic activity, explored in the discussion.

Keywords: Electronic structure; Infrared spectroscopy; Metallocenter assembly; Model compound; Molecular modeling; Nuclear magnetic resonance; Site-directed mutagenesis; Structure–function relationship; Vibrational spectroscopy.

MeSH terms

  • Bacterial Proteins / chemistry
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Biocatalysis
  • Carbon Dioxide* / chemistry
  • Carbon Dioxide* / metabolism
  • Catalysis
  • Coordination Complexes / chemistry
  • Coordination Complexes / metabolism
  • Hydrogenation
  • Models, Molecular
  • Rhodium* / chemistry

Substances

  • Rhodium
  • Carbon Dioxide
  • Bacterial Proteins
  • Coordination Complexes