Lysine methylation: A strategy to improve in-cell NMR spectroscopy of proteins

Anal Chim Acta. 2024 Oct 2:1324:343099. doi: 10.1016/j.aca.2024.343099. Epub 2024 Aug 13.

Abstract

Background: In-cell NMR is a valuable technique for investigating protein structure and function in cellular environments. However, challenges arise due to highly crowded cellular environment, where nonspecific interactions between the target protein and other cellular components can lead to signals broadening or disappearance in NMR spectra.

Results: We implemented chemical reduction methylation to selectively modify lysine residues on protein surfaces aiming to weaken charge interactions and recover obscured NMR signals. This method was tested on six proteins varying in molecular size and lysine content. While methylation did not disrupt the protein's native conformation, it successful restored some previously obscured in-cell NMR signals, particularly for proteins with high isoelectric points that decreased post-methylation.

Significance: This study affirms lysine methylation as a feasible approach to enhance the sensitivity of in-cell NMR spectra for protein studies. By mitigating signal loss due to nonspecific interactions, this method expands the utility of in-cell NMR for investigating proteins in their natural cellular environment, potentially leading to more accurate structural and functional insights.

Keywords: In-cell NMR; Intracellular environment; Lysine methylation; Non-specific interactions; Signal enhancement.

MeSH terms

  • Humans
  • Lysine* / analysis
  • Lysine* / chemistry
  • Methylation
  • Nuclear Magnetic Resonance, Biomolecular*
  • Proteins / analysis
  • Proteins / chemistry

Substances

  • Lysine
  • Proteins