Expression patterns of candidate genes for the Lr46/Yr29 "slow rust" locus in common wheat (Triticum aestivum L.) and associated miRNAs inform of the gene conferring the Puccinia triticina resistance trait

PLoS One. 2024 Sep 6;19(9):e0309944. doi: 10.1371/journal.pone.0309944. eCollection 2024.

Abstract

Leaf rust caused by Puccinia triticina (Pt) is one of the most impactful diseases causing substantial losses in common wheat (Triticum aestivum L.) crops. In adult plants resistant to Pt, a horizontal adult plant resistance (APR) is observed: APR protects the plant against multiple pathogen races and is distinguished by durable persistence under production conditions. The Lr46/Yr29 locus was mapped to chromosome 1B of common wheat genome, but the identity of the underlying gene has not been demonstrated although several candidate genes have been proposed. This study aimed to analyze the expression of nine candidate genes located at the Lr46/Yr29 locus and their four complementary miRNAs (tae-miR5384-3p, tae-miR9780, tae-miR9775, and tae-miR164), in response to Pt infection. The plant materials tested included five reference cultivars in which the molecular marker csLV46G22 associated with the Lr46/Yr29-based Pt resistance was identified, as well as one susceptible control cultivar. Biotic stress was induced in adult plants by inoculation with fungal spores under controlled conditions. Plant material was sampled before and at 6, 12, 24, 48 hours post inoculation (hpi). Differences in expression of candidate genes at the Lr46/Yr29 locus were analyzed by qRT-PCR and showed that the expression of the genes varied at the analyzed time points. The highest expression of Lr46/Yr29 candidate genes (Lr46-Glu1, Lr46-Glu2, Lr46-Glu3, Lr46-RLK1, Lr46-RLK2, Lr46-RLK3, Lr46-RLK4, Lr46-Snex, and Lr46-WRKY) occurred at 12 and 24 hpi and such expression profiles were obtained only for one candidate gene among the nine genes analyzed (Lr46-Glu2), indicating that it may be a contributing factor in the resistance response to Pt infection.

MeSH terms

  • Basidiomycota / physiology
  • Disease Resistance* / genetics
  • Gene Expression Regulation, Plant*
  • Genes, Plant
  • MicroRNAs* / genetics
  • Plant Diseases* / genetics
  • Plant Diseases* / microbiology
  • Puccinia*
  • Triticum* / genetics
  • Triticum* / microbiology

Substances

  • MicroRNAs

Supplementary concepts

  • Puccinia triticina

Grants and funding

This study was financed by the framework of Ministry of Agriculture and Rural Development (Poland) program: “Biological Progress in Plant Production” in years 2021–2027, task No. 5: “A molecular analysis of an adult plant slow rusting genes conferring resistance to rusts caused by Puccinia sp.” (DHR.hm.802.11.2023); Project leader: M.T. Kwiatek. Publication costs were covered by the University of Tennessee Open Access Publishing Fund awarded to M. Nowicki. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.