Perturbing TET2 condensation promotes aberrant genome-wide DNA methylation and curtails leukaemia cell growth

Nat Cell Biol. 2024 Dec;26(12):2154-2167. doi: 10.1038/s41556-024-01496-7. Epub 2024 Sep 9.

Abstract

The ten-eleven translocation (TET) family of dioxygenases maintain stable local DNA demethylation during cell division and lineage specification. As the major catalytic product of TET enzymes, 5-hydroxymethylcytosine is selectively enriched at specific genomic regions, such as enhancers, in a tissue-dependent manner. However, the mechanisms underlying this selectivity remain unresolved. Here we unveil a low-complexity insert domain within TET2 that facilitates its biomolecular condensation with epigenetic modulators, such as UTX and MLL4. This co-condensation fosters a permissive chromatin environment for precise DNA demethylation. Disrupting low-complexity insert-mediated condensation alters the genomic binding of TET2 to cause promiscuous DNA demethylation and genome reorganization. These changes influence the expression of key genes implicated in leukaemogenesis to curtail leukaemia cell proliferation. Collectively, this study establishes the pivotal role of TET2 condensation in orchestrating precise DNA demethylation and gene transcription to support tumour cell growth.

MeSH terms

  • 5-Methylcytosine / analogs & derivatives
  • 5-Methylcytosine / metabolism
  • Animals
  • Cell Line, Tumor
  • Cell Proliferation*
  • Chromatin / genetics
  • Chromatin / metabolism
  • DNA Methylation*
  • DNA-Binding Proteins* / genetics
  • DNA-Binding Proteins* / metabolism
  • Dioxygenases* / genetics
  • Dioxygenases* / metabolism
  • Epigenesis, Genetic
  • Gene Expression Regulation, Leukemic
  • HEK293 Cells
  • Histone-Lysine N-Methyltransferase / genetics
  • Histone-Lysine N-Methyltransferase / metabolism
  • Humans
  • Leukemia* / genetics
  • Leukemia* / metabolism
  • Leukemia* / pathology
  • Mice
  • Neoplasm Proteins
  • Proto-Oncogene Proteins* / genetics
  • Proto-Oncogene Proteins* / metabolism

Substances

  • Dioxygenases
  • DNA-Binding Proteins
  • Proto-Oncogene Proteins
  • TET2 protein, human
  • Histone-Lysine N-Methyltransferase
  • 5-Methylcytosine
  • Chromatin
  • 5-hydroxymethylcytosine
  • Tet2 protein, mouse
  • KMT2D protein, human
  • Neoplasm Proteins