CFTR modulators response of S737F and T465N CFTR variants on patient-derived rectal organoids

Orphanet J Rare Dis. 2024 Sep 13;19(1):343. doi: 10.1186/s13023-024-03334-3.

Abstract

Background: Predictions based on patient-derived materials of CFTR modulators efficacy have been performed lately in patient-derived cells, extending FDA-approved drugs for CF patients harboring rare variants. Here we developed intestinal organoids from subjects carrying S737F- and T465N-CFTR in trans with null alleles to evaluate their functional impact on CFTR protein function and their restoration upon CFTR modulator treatment. The characterization of S737F-CFTR was performed in two subjects recently assessed in nasal epithelial cells but not in colonoids.

Results: Our functional analysis (Ussing chamber) confirmed that S737F-CFTR is a mild variant with residual function as investigated in colonoids of patients with S737F/Dele22-24 and S737F/W1282X genotypes. An increase of current upon Elexacaftor/Tezacaftor/Ivacaftor (ETI) treatment was recorded for the former genotype. T465N is a poorly characterized missense variant that strongly impacts CFTR function, as almost no CFTR-mediated anion secretion was registered for T465N/Q39X colonoids. ETI treatment substantially improved CFTR-mediated anion secretion and increased the rescue of mature CFTR expression compared to either untreated colonoids or to dual CFTR modulator therapies.

Conclusions: Our study confirms the presence of a residual function of the S737F variant and its limited response to CFTR modulators while predicting for the first time the potential clinical benefit of Trikafta® for patients carrying the rare T465N variant.

Keywords: CFTR modulators; Electrophysiological measurements; Human intestinal monolayers; Personalized medicine; Rare mutations.

MeSH terms

  • Aminophenols* / pharmacology
  • Benzodioxoles* / pharmacology
  • Cystic Fibrosis Transmembrane Conductance Regulator* / genetics
  • Cystic Fibrosis Transmembrane Conductance Regulator* / metabolism
  • Cystic Fibrosis* / drug therapy
  • Cystic Fibrosis* / genetics
  • Cystic Fibrosis* / metabolism
  • Cystic Fibrosis* / pathology
  • Drug Combinations
  • Female
  • Humans
  • Indoles / pharmacology
  • Male
  • Organoids* / drug effects
  • Organoids* / metabolism
  • Pyrazoles / pharmacology
  • Pyridines
  • Pyrrolidines
  • Quinolines / pharmacology
  • Quinolones* / pharmacology

Substances

  • Cystic Fibrosis Transmembrane Conductance Regulator
  • Benzodioxoles
  • Quinolones
  • Aminophenols
  • ivacaftor
  • tezacaftor
  • CFTR protein, human
  • Indoles
  • elexacaftor
  • Drug Combinations
  • Pyrazoles
  • Quinolines
  • Pyridines
  • Pyrrolidines