Genome-based taxonomy and functional prediction of Sphingomonas fuzhouensis sp. nov. and Massilia phyllosphaerae sp. nov. isolated from Pennisetum sp. with plant growth-promoting potential

Antonie Van Leeuwenhoek. 2024 Sep 18;118(1):6. doi: 10.1007/s10482-024-02017-0.

Abstract

Two facultatively aerobic strains, designated SGZ-02T and SGZ-792T, were isolated from plant Pennisetum sp., exhibiting the highest 16S rRNA gene sequence similarities with the type strains of Sphingomonas zeae LMG 28739T (98.6%) and Massilia forsythiae NBRC 114511T (98.4%), respectively. SGZ-02T grew between 5 and 45 °C, pH 5.0-11.0 and tolerated NaCl concentrations of 0-4% (w/v), whereas SGZ-792T thrived at 5-40 °C, pH 5.0-11.0 and NaCl tolerance to 0-3.5% (w/v). The major quinone of SGZ-02T was ubiquinone-10, with the dominant fatty acids being C16:0 (13.5%), Summed Feature 3 (6.3%), C14:02-OH (5.3%) and Summed Feature 8 (66.3%). SGZ-792T predominantly contained ubiquinone-8, with major fatty acids being C16:0 (20.3%), Summed Feature 3 (5.0%) and Summed Feature 8 (54.7%). Average nucleotide identity and digital DNA-DNA hybridization values between two strains and their closest references strains were below the bacterial species threshold. Based on genotypic and phenotypic characteristics, strains SGZ-02T and SGZ-792T are proposed as novel species within the genera Sphingomonas and Massilia, respectively. The suggested names for the new species are Sphingomonas fuzhouensis sp. nov. (SGZ-02T = GDMCC 1.4033T = JCM 36769T) and Massilia phyllosphaerae sp. nov. (SGZ-792T = GDMCC 1.4211T = JCM 36643T), respectively.

Keywords: Massilia phyllosphaerae sp. nov.; Sphingomonas fuzhouensis sp. nov.; Plant growth-promoting; Polyphasic taxonomy.

MeSH terms

  • Bacterial Typing Techniques
  • Base Composition
  • DNA, Bacterial* / genetics
  • Fatty Acids* / analysis
  • Fatty Acids* / metabolism
  • Genome, Bacterial
  • Pennisetum* / microbiology
  • Phylogeny*
  • RNA, Ribosomal, 16S* / genetics
  • Sequence Analysis, DNA
  • Sphingomonas* / classification
  • Sphingomonas* / genetics
  • Sphingomonas* / isolation & purification
  • Sphingomonas* / physiology

Substances

  • RNA, Ribosomal, 16S
  • Fatty Acids
  • DNA, Bacterial