Engineered CRISPR RNA improves the RNA cleavage efficiency of hfCas13X

FEBS Lett. 2024 Oct;598(19):2438-2449. doi: 10.1002/1873-3468.15025. Epub 2024 Sep 26.

Abstract

As the most compact variant in the Cas13 family, CRISPR-Cas13X holds considerable promise for gene therapy applications. The development of high-fidelity Cas13X (hfCas13X) mutants has enhanced the safety profile for in vivo applications. However, a notable reduction in on-target cleavage efficiency accompanies the diminished collateral cleavage activity in hfCas13X. In this study, we obtained two engineered crRNA mutants that notably enhance the on-target cleavage efficiency of hfCas13X. Furthermore, we have identified a novel crRNA structure that consistently augments the on-target cleavage efficiency of hfCas13X across various cellular environments, without significant enhancement of its collateral activity. These findings collectively enrich the gene-editing toolkit, presenting a more effective hfCas13X system for future research and application.

Keywords: collateral cleavage; crRNA; direct repeats; hfCas13X; on‐target cleavage.

MeSH terms

  • CRISPR-Associated Proteins / genetics
  • CRISPR-Associated Proteins / metabolism
  • CRISPR-Cas Systems*
  • Clustered Regularly Interspaced Short Palindromic Repeats
  • Gene Editing / methods
  • HEK293 Cells
  • Humans
  • Mutation
  • RNA / genetics
  • RNA / metabolism
  • RNA Cleavage
  • RNA, Guide, CRISPR-Cas Systems / genetics
  • RNA, Guide, CRISPR-Cas Systems / metabolism

Substances

  • CRISPR-Associated Proteins
  • RNA, Guide, CRISPR-Cas Systems
  • RNA