HuBMAPR: an R Client for the HuBMAP Data Portal

bioRxiv [Preprint]. 2024 Sep 27:2024.09.26.615227. doi: 10.1101/2024.09.26.615227.

Abstract

Summary: The Human BioMolecular Atlas Program (HuBMAP) constructs the worldwide available platform to research the human body at the cellular level. The HuBMAP Data Portal encompasses a wide range of data resources measured on emerging experimental technologies at a spatial resolution. To broaden access to the HuBMAP Data Portal, we introduce an R client called HuBMAPR available on Bioconductor. This gives an efficient and programmatic interface, enabling researchers to discover and retrieve HuBMAP data easier and faster.

Availability: This package is available on GitHub (https://github.com/christinehou11/HuBMAPR) and has been submitted to Bioconductor.

Keywords: Application Program Interface; HuBMAP.

Publication types

  • Preprint