A comprehensive review of livestock development: insights into domestication, phylogenetics, diversity, and genomic advances

Mamm Genome. 2024 Dec;35(4):577-599. doi: 10.1007/s00335-024-10075-y. Epub 2024 Oct 14.

Abstract

Livestock plays an essential role in sustaining human livelihoods, offering a diverse range of species integral to food security, economic stability, and cultural traditions. The domestication of livestock, which began over 10,000 years ago, has driven significant genetic changes in species such as cattle, buffaloes, sheep, goats, and pigs. Recent advancements in genomic technologies, including next-generation sequencing (NGS), genome-wide association studies (GWAS), and genomic selection, have dramatically enhanced our understanding of these genetic developments. This review brings together key research on the domestication process, phylogenetics, genetic diversity, and selection signatures within major livestock species. It emphasizes the importance of admixture studies and evolutionary forces like natural selection, genetic drift, and gene flow in shaping livestock populations. Additionally, the integration of machine learning with genomic data offers new perspectives on the functional roles of genes in adaptation and evolution. By exploring these genomic advancements, this review provides insights into genetic variation and evolutionary processes that could inform future approaches to improving livestock management and adaptation to environmental challenges, including climate change.

Keywords: Evolution; GWAS; Genetic diversity; Genomic selection; Selection signature.

Publication types

  • Review

MeSH terms

  • Animals
  • Domestication*
  • Evolution, Molecular
  • Genetic Variation*
  • Genome / genetics
  • Genome-Wide Association Study
  • Genomics* / methods
  • Livestock* / genetics
  • Phylogeny*
  • Selection, Genetic