Cryo-EM reveals transition states of the Acinetobacter baumannii F1-ATPase rotary subunits γ and ε, unveiling novel compound targets

FASEB J. 2024 Oct;38(20):e70131. doi: 10.1096/fj.202401629R.

Abstract

Priority 1: critical WHO pathogen Acinetobacter baumannii depends on ATP synthesis and ATP:ADP homeostasis and its bifunctional F1FO-ATP synthase. While synthesizing ATP, it regulates ATP cleavage by its inhibitory ε subunit to prevent wasteful ATP consumption. We determined cryo-electron microscopy structures of the ATPase active A. baumannii F1-αßγεΔ134-139 mutant in four distinct conformational states, revealing four transition states and structural transformation of the ε's C-terminal domain, forming the switch of an ATP hydrolysis off- and an ATP synthesis on-state based. These alterations go in concert with altered motions and interactions in the catalytic- and rotary subunits of this engine. These A. baumannii interacting sites provide novel pathogen-specific targets for inhibitors, with the aim of ATP depletion and/or ATP synthesis and growth inhibition. Furthermore, the presented diversity to other bacterial F-ATP synthases extends the view of structural elements regulating such a catalyst.

Keywords: ATP synthesis; ESKAPE; F‐ATP synthase; OXPHOS; bioenergetics; ion channels; multidrug resistance.

MeSH terms

  • Acinetobacter baumannii* / enzymology
  • Acinetobacter baumannii* / metabolism
  • Adenosine Triphosphate* / metabolism
  • Bacterial Proteins / chemistry
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Cryoelectron Microscopy*
  • Models, Molecular
  • Protein Subunits / metabolism
  • Proton-Translocating ATPases* / chemistry
  • Proton-Translocating ATPases* / genetics
  • Proton-Translocating ATPases* / metabolism

Substances

  • Proton-Translocating ATPases
  • Adenosine Triphosphate
  • Bacterial Proteins
  • Protein Subunits