Phosphorylation of P-stalk proteins defines the ribosomal state for interaction with auxiliary protein factors

EMBO Rep. 2024 Dec;25(12):5478-5506. doi: 10.1038/s44319-024-00297-1. Epub 2024 Oct 28.

Abstract

Ribosomal action is facilitated by the orchestrated work of trans-acting factors and ribosomal elements, which are subject to regulatory events, often involving phosphorylation. One such element is the ribosomal P-stalk, which plays a dual function: it activates translational GTPases, which support basic ribosomal functions, and interacts with the Gcn2 kinase, linking the ribosomes to the ISR pathway. We show that P-stalk proteins, which form a pentamer, exist in the cell exclusively in a phosphorylated state at five C-terminal domains (CTDs), ensuring optimal translation (speed and accuracy) and may play a role in the timely regulation of the Gcn2-dependent stress response. Phosphorylation of the CTD induces a structural transition from a collapsed to a coil-like structure, and the CTD gains conformational freedom, allowing specific but transient binding to various protein partners, optimizing the ribosome action. The report reveals a unique feature of the P-stalk proteins, indicating that, unlike most ribosomal proteins, which are regulated by phosphorylation in an on/off manner, the P-stalk proteins exist in a constantly phosphorylated state, which optimizes their interaction with auxiliary factors.

Keywords: Gcn2 Kinase; Phosphorylation; Ribosomal Proteins; Ribosomal Stalk; Ribosome.

MeSH terms

  • Phosphorylation
  • Protein Binding*
  • Protein Biosynthesis
  • Protein Domains
  • Ribosomal Proteins* / chemistry
  • Ribosomal Proteins* / metabolism
  • Ribosomes* / metabolism
  • Saccharomyces cerevisiae / metabolism
  • Saccharomyces cerevisiae Proteins / chemistry
  • Saccharomyces cerevisiae Proteins / genetics
  • Saccharomyces cerevisiae Proteins / metabolism

Substances

  • Ribosomal Proteins
  • Saccharomyces cerevisiae Proteins