Subsurface microbial community structure shifts along the geological features of the Central American Volcanic Arc

PLoS One. 2024 Nov 13;19(11):e0308756. doi: 10.1371/journal.pone.0308756. eCollection 2024.

Abstract

Subduction of the Cocos and Nazca oceanic plates beneath the Caribbean plate drives the upward movement of deep fluids enriched in carbon, nitrogen, sulfur, and iron along the Central American Volcanic Arc (CAVA). These compounds fuel diverse subsurface microbial communities that in turn alter the distribution, redox state, and isotopic composition of these compounds. Microbial community structure and functions vary according to deep fluid delivery across the arc, but less is known about how microbial communities differ along the axis of a convergent margin as geological features (e.g., extent of volcanism and subduction geometry) shift. Here, we investigate changes in bacterial 16S rRNA gene amplicons and geochemical analysis of deeply-sourced seeps along the southern CAVA, where subduction of the Cocos Ridge alters the geological setting. We find shifts in community composition along the convergent margin, with communities in similar geological settings clustering together independently of the proximity of sample sites. Microbial community composition correlates with geological variables such as host rock type, maturity of hydrothermal fluid and slab depth along different segments of the CAVA. This reveals tight coupling between deep Earth processes and subsurface microbial activity, controlling community distribution, structure and composition along a convergent margin.

MeSH terms

  • Bacteria / classification
  • Bacteria / genetics
  • Central America
  • Geology
  • Microbiota*
  • Phylogeny
  • RNA, Ribosomal, 16S* / genetics
  • Volcanic Eruptions*

Substances

  • RNA, Ribosomal, 16S

Grants and funding

The authors acknowledge the Biology Meets Subduction Project, funded by the Alfred P. Sloan Foundation and the Deep Carbon Observatory (G-2016-7206) to P.H.B, J.M.d.M, D.G., and K.G.L., with DNA sequencing from the Census of Deep Life. Additional support came from NSF FRES (Award# 21211637) to P.H.B., J.M.d.M and K.G.L, NSF Award OCE-2151015 to P.H.B. and K.G.L.. U. S. Department of Energy, Office of Science, Office of Biological and Environmental Research, Genomic Science Program (DE-SC0020369 to K.G.L). FONDECYT Grant 11191138 and COPAS COASTAL ANID FB210021 (ANID Chile) to G.L.J. D.G. was partially supported by funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program Grant Agreement No. 948972—COEVOLVE—ERC-2020-STG. M.B. was funded by the EU CampusWorld scholarship from UNIVPM to visit the laboratory of K.G.L. in the framework of a research collaboration between K.G.L. and D.G. S.Z. was supported by Australian Research Council grant DE210100084, and Alfred P Sloan grants G-2017-9997 and G-2018-11296. GPlates development is funded by the AuScope National Collaborative Research Infrastructure System (NCRIS) program.