Synthesis and structure-affinity relationships of spirocyclic σ1 receptor ligands with tetrahydropyran scaffold

Eur J Med Chem. 2025 Jan 5:281:117002. doi: 10.1016/j.ejmech.2024.117002. Epub 2024 Oct 26.

Abstract

The σ1 receptor plays a key role in the regulation of various processes in the human body; it is involved in the development of neurodegenerative and neuropsychiatric diseases and is overexpressed in several human tumors rendering it an important target for potential drug candidates. In this project, spirocyclic σ1 receptor ligands with different substituents in 4- and 9-position were synthesized and investigated for their σ1 receptor affinity and selectivity over related targets. The σ1 affinity of the ligands was correlated with their lipophilicity (logD7.4 value) giving insight into their lipophilic ligand efficiency (LLE). The (pyridin-3-yl)methyl derivative 5i showed a promising balance of high σ1 affinity (Ki1) = 3.9 nM) and selectivity (>250-fold) as well as high LLE of 5.8. 5i has a high plasma protein binding (89 %) and promising metabolic stability in the presence of mouse liver microsomes and NADPH (83 % intact after 90 min). Increasing the size of the piperidine ring of the spirocyclic ligands 5 to an azepane ring led to considerably increased σ1 affinity (Ki(5a) = 1.2 nM, Ki(23a) = 0.42 nM) and selectivity over σ2 receptors (5a: 45-fold, 23a: 150-fold).

Keywords: LLE value; Lipophilicity; Metabolic stability; Plasma protein binding; Prins reaction; Receptor selectivity; Reductive alkylation; Rigidization; Spirocyclic piperidines; Stereochemistry; Structure affinity relationships; Suzuki coupling; sp(3) rich scaffolds; σ receptors; σ(1) receptor affinity.

MeSH terms

  • Animals
  • Dose-Response Relationship, Drug
  • Humans
  • Ligands
  • Mice
  • Microsomes, Liver / chemistry
  • Microsomes, Liver / metabolism
  • Molecular Structure
  • Pyrans* / chemical synthesis
  • Pyrans* / chemistry
  • Pyrans* / metabolism
  • Pyrans* / pharmacology
  • Receptors, sigma* / metabolism
  • Sigma-1 Receptor
  • Spiro Compounds* / chemical synthesis
  • Spiro Compounds* / chemistry
  • Spiro Compounds* / metabolism
  • Spiro Compounds* / pharmacology
  • Structure-Activity Relationship

Substances

  • Ligands
  • Receptors, sigma
  • Spiro Compounds
  • Pyrans
  • Sigma-1 Receptor