Identification of Biochemical Determinants for Diagnosis and Prediction of Severity in 5q Spinal Muscular Atrophy Using 1H-Nuclear Magnetic Resonance Metabolic Profiling in Patient-Derived Biofluids

Int J Mol Sci. 2024 Nov 12;25(22):12123. doi: 10.3390/ijms252212123.

Abstract

This study explores the potential of 1H-NMR spectroscopy-based metabolic profiling in various biofluids as a diagnostic and predictive modality to assess disease severity in individuals with 5q spinal muscular atrophy. A total of 213 biosamples (urine, plasma, and CSF) from 153 treatment-naïve patients with SMA across five German centers were analyzed using 1H-NMR spectroscopy. Prediction models were developed using machine learning algorithms which enabled the patients with SMA to be grouped according to disease severity. A quantitative enrichment analysis was employed to identify metabolic pathways associated with disease progression. The results demonstrate high sensitivity (84-91%) and specificity (91-94%) in distinguishing treatment-naïve patients with SMA from controls across all biofluids. The urinary and plasma profiles differentiated between early-onset (type I) and later-onset (type II/III) SMA with over 80% accuracy. Key metabolic differences involved alterations in energy and amino acid metabolism. This study suggests that 1H-NMR spectroscopy based metabolic profiling may be a promising, non-invasive tool to identify patients with SMA and for severity stratification, potentially complementing current diagnostic and prognostic strategies in SMA management.

Keywords: 1H-NMR spectroscopy; metabolic profiling; metabolomics; spinal muscular atrophy.

MeSH terms

  • Adolescent
  • Adult
  • Biomarkers
  • Body Fluids / metabolism
  • Child
  • Child, Preschool
  • Female
  • Humans
  • Infant
  • Machine Learning
  • Magnetic Resonance Spectroscopy / methods
  • Male
  • Metabolome
  • Metabolomics / methods
  • Muscular Atrophy, Spinal* / diagnosis
  • Muscular Atrophy, Spinal* / metabolism
  • Prognosis
  • Proton Magnetic Resonance Spectroscopy / methods
  • Severity of Illness Index*
  • Young Adult

Substances

  • Biomarkers