Mechanistic basis for the emergence of EPS1 as a catalyst in salicylic acid biosynthesis of Brassicaceae

Nat Commun. 2024 Nov 28;15(1):10356. doi: 10.1038/s41467-024-54437-1.

Abstract

Salicylic acid (SA) production in Brassicaceae plants is uniquely accelerated from isochorismate by EPS1, a newly identified enzyme in the BAHD acyltransferase family. We present crystal structures of EPS1 from Arabidopsis thaliana in both its apo and substrate-analog-bound forms. Integrating microsecond-scale molecular dynamics simulations with quantum mechanical cluster modeling, we propose a pericyclic rearrangement lyase mechanism for EPS1. We further reconstitute the isochorismate-derived SA biosynthesis pathway in Saccharomyces cerevisiae, establishing an in vivo platform to examine the impact of active-site residues on EPS1 functionality. Moreover, stable transgenic expression of EPS1 in soybean increases basal SA levels, highlighting the enzyme's potential to enhance defense mechanisms in non-Brassicaceae plants lacking an EPS1 ortholog. Our findings illustrate the evolutionary adaptation of an ancestral enzyme's active site to enable a novel catalytic mechanism that boosts SA production in Brassicaceae plants.

MeSH terms

  • Acyltransferases / genetics
  • Acyltransferases / metabolism
  • Arabidopsis Proteins* / genetics
  • Arabidopsis Proteins* / metabolism
  • Arabidopsis* / genetics
  • Arabidopsis* / metabolism
  • Brassicaceae / genetics
  • Brassicaceae / metabolism
  • Catalysis
  • Catalytic Domain*
  • Crystallography, X-Ray
  • Glycine max / genetics
  • Glycine max / metabolism
  • Molecular Dynamics Simulation*
  • Plants, Genetically Modified
  • Saccharomyces cerevisiae* / genetics
  • Saccharomyces cerevisiae* / metabolism
  • Salicylic Acid* / chemistry
  • Salicylic Acid* / metabolism

Substances

  • Salicylic Acid
  • Arabidopsis Proteins
  • Acyltransferases