Cucurbit[7]uril and β-cyclodextrin as hosts for dopamine: complexation, affinity, and computational insights

J Biomol Struct Dyn. 2024 Dec 3:1-10. doi: 10.1080/07391102.2024.2435625. Online ahead of print.

Abstract

Dopamine (DP), an essential neurotransmitter implicated in diverse brain functions, was investigated as a guest molecule within the host cavities of cucurbit[7]uril (CB7) and β-cyclodextrin (βCD) using isothermal titration calorimetry (ITC), UV-titration, 1H NMR, molecular dynamics (MD) and density functional theory (DFT) calculations. The experimentally estimated binding constants of the 1:1 complexes of DP with CB7 and βCD were found to be 5.3 × 105 and 2.7 × 103 M-1, respectively. 1H NMR results further confirmed the complex formation for both hosts and provided structural insights. MD simulations revealed in the case of DP-CB7 complex a more rigid structure and deeper inclusion of the catechol moiety. Furthermore, results from the Molecular-Mechanics Poisson-Boltzmann Surface Area (MM-PBSA) method supported the experimental affinity data, revealing the higher affinity of DP towards CB7, a result of ion-dipole interactions. DFT calculations further supported the affinity data. TD-DFT predicted for both complexes a red shift in the absorption peak of DP.

Keywords: Cucurbituril; DFT; cyclodextrin; dopamine; molecular dynamics; neurotransmitter.