High-resolution profile of neoantigen-specific TCR activation links moderate stimulation to increased resilience of engineered TCR-T cells

Nat Commun. 2024 Dec 3;15(1):10520. doi: 10.1038/s41467-024-53911-0.

Abstract

Neoantigen-specific T cell receptors (neoTCRs) promise safe, personalized anti-tumor immunotherapy. However, detailed assessment of neoTCR-characteristics affecting therapeutic efficacy is mostly missing. Previously, we identified diverse neoTCRs restricted to different neoantigens in a melanoma patient. In this work, we now combine single-cell TCR-sequencing and RNA-sequencing after neoantigen-specific restimulation of peripheral blood-derived CD8+ T cells of this patient. We detect neoTCRs with specificity for the previously detected neoantigens and perform fine-characterization of neoTCR-transgenic (tg) T cells in vitro and in vivo. We describe a heterogeneous spectrum of TCR-intrinsic activation patterns in response to a shared neoepitope ranging from previously detected more highly frequent neoTCRs with moderate activation to rare ones with initially stronger activation. Experimental restimulation of adoptively transferred neoTCR-tg T cells in a xenogeneic rechallenge tumor model demonstrates superior anti-tumor responses of moderate neoTCR-tg T cells upon repeated tumor contact. These insights have significant implications for the selection of TCRs for therapeutic engineering of TCR-tg T cells.

MeSH terms

  • Animals
  • Antigens, Neoplasm* / immunology
  • CD8-Positive T-Lymphocytes* / immunology
  • Humans
  • Immunotherapy, Adoptive / methods
  • Lymphocyte Activation / immunology
  • Melanoma* / genetics
  • Melanoma* / immunology
  • Melanoma* / therapy
  • Mice
  • Receptors, Antigen, T-Cell* / immunology
  • Receptors, Antigen, T-Cell* / metabolism
  • Single-Cell Analysis
  • Xenograft Model Antitumor Assays

Substances

  • Receptors, Antigen, T-Cell
  • Antigens, Neoplasm