Evaluating the prognostic potential of telomerase signature in breast cancer through advanced machine learning model

Front Immunol. 2024 Nov 28:15:1462953. doi: 10.3389/fimmu.2024.1462953. eCollection 2024.

Abstract

Background: Breast cancer prognosis remains a significant challenge due to the disease's molecular heterogeneity and complexity. Accurate predictive models are critical for improving patient outcomes and tailoring personalized therapies.

Methods: We developed a Machine Learning-assisted Telomerase Signature (MLTS) by integrating multi-omics data from nine independent breast cancer datasets. Using multiple machine learning algorithms, we identified six telomerase-related genes significantly associated with patient survival. The predictive performance of MLTS was evaluated against 66 existing breast cancer prognostic models across diverse cohorts.

Results: The MLTS demonstrated superior predictive accuracy, stability, and reliability compared to other models. Patients with high MLTS scores exhibited increased tumor mutational burden, chromosomal instability, and poor survival outcomes. Single-cell RNA sequencing analysis further revealed higher MLTS scores in aneuploid tumor cells, suggesting a role in cancer progression. Immune profiling indicated distinct tumor microenvironment characteristics associated with MLTS scores, potentially guiding therapeutic decisions.

Conclusions: Our findings highlight the utility of MLTS as a robust prognostic biomarker for breast cancer. The ability of MLTS to predict patient outcomes and its association with key genomic and cellular features underscore its potential as a target for personalized therapy. Future research may focus on integrating MLTS with additional molecular signatures to enhance its clinical application in precision oncology.

Keywords: PD-1; breast cancer; gemcitabine; machine learning; telomerase genes.

MeSH terms

  • Biomarkers, Tumor* / genetics
  • Breast Neoplasms* / diagnosis
  • Breast Neoplasms* / genetics
  • Breast Neoplasms* / immunology
  • Breast Neoplasms* / mortality
  • Female
  • Gene Expression Profiling
  • Gene Expression Regulation, Neoplastic
  • Humans
  • Machine Learning*
  • Prognosis
  • Telomerase* / genetics
  • Telomerase* / metabolism
  • Transcriptome
  • Tumor Microenvironment / genetics
  • Tumor Microenvironment / immunology

Substances

  • Telomerase
  • Biomarkers, Tumor

Grants and funding

The author(s) declare that financial support was received for the research, authorship, and/or publication of this article. This work was supported by the Talent Fund of Guizhou Provincial People’s Hospital ( (2022)-33) and Beihua University graduate innovation program ( (2024)073).