Depth heterogeneity of lignin-degrading microbiome and organic carbon processing in mangrove sediments

NPJ Biofilms Microbiomes. 2025 Jan 6;11(1):5. doi: 10.1038/s41522-024-00638-x.

Abstract

Mangrove ecosystems are globally recognized for their blue carbon (C) sequestration capacity. Lignocellulosic detritus constitutes the primary C input to mangrove sediments, but the microbial processes involved in its bioprocessing remain unclear. Using lignocellulosic analysis and metagenomic sequencing across five 100-cm sediment cores, we found a high proportion of lignin (95.0-97.7%) within sediments' lignocellulosic detritus, with a small fraction of lignin-degrading genes (1.24-1.98%) of lignin-degrading genes within the carbohydrate-active enzyme coding genes. Depth stratification was observed in genes and microbial communities involved in lignin depolymerization and mineralization of lignin monomer derivatives. Further microbe-centered analyses of biomass production rates and adaptive metabolism revealed diminished microbial C use efficiency potential and augmented "enzyme latch" with increasing sediment depths. These findings enhance our understanding of sedimentary organic C cycling and storage in coastal blue C ecosystems.

MeSH terms

  • Bacteria / classification
  • Bacteria / genetics
  • Bacteria / isolation & purification
  • Bacteria / metabolism
  • Biomass
  • Carbon* / metabolism
  • Geologic Sediments* / microbiology
  • Lignin* / metabolism
  • Metagenome
  • Metagenomics* / methods
  • Microbiota*
  • Sequence Analysis, DNA
  • Wetlands*

Substances

  • Lignin
  • Carbon
  • lignocellulose