Mapping Thrombosis Serum Markers by 1H-NMR Allied with Machine Learning Tools

Molecules. 2024 Dec 13;29(24):5895. doi: 10.3390/molecules29245895.

Abstract

Machine learning and artificial intelligence tools were used to investigate the discriminatory potential of blood serum metabolites for thromboembolism and antiphospholipid syndrome (APS). 1H-NMR-based metabonomics data of the serum samples of patients with arterial or venous thromboembolism (VTE) without APS (n = 32), thrombotic primary APS patients (APS, n = 32), and healthy controls (HCs) (n = 32) were investigated. Unique metabolic profiles between VTE and HCs, APS and HCs, and between VTE and triple-positive APS groups were indicative of the significant alterations in the metabolic pathways of glycolysis, the TCA cycle, lipid metabolism, and branched-chain amino acid (BCAA) metabolism, and pointed to the complex pathogenesis mechanisms of APS and VTE. Histidine, 3-hydroxybutyrate, and threonine were shown to be the top three metabolites with the most substantial impact on model predictions, suggesting that these metabolites play a pivotal role in distinguishing among APS, VTE, and HCs. These metabolites might be potential biomarkers to differentiate APS and VTE patients.

Keywords: antiphospholipid antibodies (aPLs); antiphospholipid syndrome (APS); machine learning; metabonomics; thrombosis; venous thromboembolism (VTE).

MeSH terms

  • Adult
  • Aged
  • Antiphospholipid Syndrome* / blood
  • Biomarkers* / blood
  • Female
  • Humans
  • Machine Learning*
  • Male
  • Metabolome
  • Metabolomics / methods
  • Middle Aged
  • Proton Magnetic Resonance Spectroscopy
  • Thrombosis / blood

Substances

  • Biomarkers