Paradoxical dominant negative activity of an immunodeficiency-associated activating PIK3R1 variant

Elife. 2025 Jan 21:13:RP94420. doi: 10.7554/eLife.94420.

Abstract

PIK3R1 encodes three regulatory subunits of class IA phosphoinositide 3-kinase (PI3K), each associating with any of three catalytic subunits, namely p110α, p110β, or p110δ. Constitutional PIK3R1 mutations cause diseases with a genotype-phenotype relationship not yet fully explained: heterozygous loss-of-function mutations cause SHORT syndrome, featuring insulin resistance and short stature attributed to reduced p110α function, while heterozygous activating mutations cause immunodeficiency, attributed to p110δ activation and known as APDS2. Surprisingly, APDS2 patients do not show features of p110α hyperactivation, but do commonly have SHORT syndrome-like features, suggesting p110α hypofunction. We sought to investigate this. In dermal fibroblasts from an APDS2 patient, we found no increased PI3K signalling, with p110δ expression markedly reduced. In preadipocytes, the APDS2 variant was potently dominant negative, associating with Irs1 and Irs2 but failing to heterodimerise with p110α. This attenuation of p110α signalling by a p110δ-activating PIK3R1 variant potentially explains co-incidence of gain-of-function and loss-of-function PIK3R1 phenotypes.

Keywords: APDS2; PIK3R1; SHORT syndrome; genetics; genomics; human; immunodeficiency; immunology; inflammation; insulin resistance; mouse; phosphoinositide 3-kinase.

MeSH terms

  • Class I Phosphatidylinositol 3-Kinases / genetics
  • Class I Phosphatidylinositol 3-Kinases / metabolism
  • Class Ia Phosphatidylinositol 3-Kinase* / genetics
  • Class Ia Phosphatidylinositol 3-Kinase* / metabolism
  • Fibroblasts* / metabolism
  • Growth Disorders / genetics
  • Humans
  • Hypercalcemia
  • Immunologic Deficiency Syndromes / genetics
  • Insulin Receptor Substrate Proteins / genetics
  • Insulin Receptor Substrate Proteins / metabolism
  • Metabolic Diseases
  • Mutation
  • Nephrocalcinosis
  • Phenotype
  • Phosphatidylinositol 3-Kinases / genetics
  • Phosphatidylinositol 3-Kinases / metabolism
  • Primary Immunodeficiency Diseases / genetics
  • Signal Transduction

Substances

  • PIK3R1 protein, human
  • Class Ia Phosphatidylinositol 3-Kinase
  • Insulin Receptor Substrate Proteins
  • Phosphatidylinositol 3-Kinases
  • Class I Phosphatidylinositol 3-Kinases

Supplementary concepts

  • SHORT syndrome