Identification of circadian rhythm-related biomarkers and development of diagnostic models for Crohn's disease using machine learning algorithms

Comput Methods Biomech Biomed Engin. 2025 Jan 21:1-17. doi: 10.1080/10255842.2025.2453922. Online ahead of print.

Abstract

The global rise in Crohn's Disease (CD) incidence has intensified diagnostic challenges. This study identified circadian rhythm-related biomarkers for CD using datasets from the GEO database. Differentially expressed genes underwent Weighted Gene Co-Expression Network Analysis, with 49 hub genes intersected from GeneCards data. Diagnostic models were constructed using machine learning algorithms, and biologic therapy efficacy was predicted with advanced regression techniques. Single-cell sequencing showed high gene expression in stem cells, immune, and endothelial cells, with validation confirming significant differences between CD patients and controls. These findings suggest circadian rhythm-related genes as promising diagnostic biomarkers for CD.

Keywords: Circadian rhythm; Crohn’s disease; biomarkers; diagnosis; machine learning.