Dynamics of microbial communities and metabolites during the fermentation of Ningxia goji berry wine: An integrated metagenomics and metabolomics approach

Food Res Int. 2025 Feb:201:115609. doi: 10.1016/j.foodres.2024.115609. Epub 2024 Dec 30.

Abstract

Ningxia Goji Berry Wine (NGBW), a traditional Chinese fermented beverage, exhibits complex flavor quality changes during fermentation, the mechanisms of which remain insufficiently elucidated. This study aimed to elucidate the dynamic shifts in physicochemical properties, metabolites, and microbial communities throughout the controlled fermentation process of NGBW. Metabolomic analysis identified 8 key differential volatile metabolites (VOCs) and 406 differential non-volatile metabolites. The enrichment analysis of KEGG metabolic pathways revealed that, during the fermentation of NGBW, ten critical metabolic pathways-Purine metabolism, Glycine, Serine, and Threonine metabolism, Galactose metabolism, and the Citric Acid (TCA) Cycle-play essential roles. Amplicon sequencing indicated that 25 bacterial genera dominated the microbial ecosystem (relative abundance ≥ 0.1 %). Spearman correlation analysis revealed significant associations between 5 core microorganism and flavor compounds, and 25 core microbes with non-volatile metabolites, suggesting their pivotal roles in flavor formation. This study provides a theoretical basis for optimizing the fermentation process and enhancing the flavor quality of NGBW.

Keywords: KEGG Metabolic Pathways; Metabolomics; Microbial Communities; Ningxia Goji Berry Wine.

MeSH terms

  • Bacteria / classification
  • Bacteria / genetics
  • Bacteria / metabolism
  • Fermentation*
  • Food Microbiology
  • Fruit
  • Metabolomics*
  • Metagenomics*
  • Microbiota*
  • Taste
  • Volatile Organic Compounds / analysis
  • Volatile Organic Compounds / metabolism
  • Wine* / analysis
  • Wine* / microbiology

Substances

  • Volatile Organic Compounds