A Novel Nitrite Reductase from Acinetobacter haemolyticus for Efficient Degradation of Nitrite

Biomolecules. 2025 Jan 4;15(1):63. doi: 10.3390/biom15010063.

Abstract

Nitrite reductases play a crucial role in the nitrogen cycle, demonstrating significant potential for applications in the food industry and environmental remediation, particularly for nitrite degradation and detection. In this study, we identified a novel nitrite reductase (AhNiR) from a newly isolated denitrifying bacterium, Acinetobacter haemolyticus YD01. We constructed a heterologous expression system using E. coli BL21/pET28a-AhNir, which exhibited remarkable nitrite reductase enzyme activity of 29 U/mL in the culture broth, substantially higher than that reported for other strains. Structural analysis of AhNiR revealed the presence of [Fe-S] clusters, with molecular docking studies identifying Tyr-282 and Ala-289 as key catalytic sites. The enzymatic properties of AhNiR demonstrated an optimal pH of 7.5 and an optimal catalytic temperature of 30 °C. Its kinetic parameters, Km and vmax, were 1.53 mmol/L and 10.18 mmol/min, respectively, fitting with the Michaelis-Menten equation. This study represents the first report of a nitrite reductase from a denitrifying bacterium, providing a new enzyme source for nitrite degradation applications in the food industry and environmental remediation, as well as for biosensing technologies aimed at nitrite detection.

Keywords: Acinetobacter haemolyticus; homology modeling; nitrite reductase; nitrite reduction.

MeSH terms

  • Acinetobacter* / enzymology
  • Acinetobacter* / genetics
  • Bacterial Proteins / chemistry
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Biodegradation, Environmental
  • Catalytic Domain
  • Escherichia coli / enzymology
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Hydrogen-Ion Concentration
  • Kinetics
  • Molecular Docking Simulation
  • Nitrite Reductases* / chemistry
  • Nitrite Reductases* / genetics
  • Nitrite Reductases* / metabolism
  • Nitrites* / metabolism
  • Temperature

Substances

  • Nitrite Reductases
  • Nitrites
  • Bacterial Proteins