Treatment of ionic species in force-field calculations: sulfate and carboxylate groups in carbohydrates

Int J Biol Macromol. 1995 Jun;17(3-4):131-6. doi: 10.1016/0141-8130(95)92679-k.

Abstract

Ab initio computations with different basis sets (up to 6-31 + G* *) on methylsulfate and N-methylsulfate anions and on the ionic and neutral forms of acetic acid are presented. The atomic charges for the O-sulfo group, computed using the Merz-Kollman method at the highest level of theory, were inserted in a MM2-derived force-field; its current parametrization affords a 0.22 A root-mean-square deviation with respect to five crystal structures of sulfated monosaccharides.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acetates*
  • Acetic Acid
  • Anions
  • Carbohydrate Conformation*
  • Models, Molecular
  • Models, Theoretical
  • Molecular Conformation
  • Sulfates*
  • Sulfuric Acid Esters*

Substances

  • Acetates
  • Anions
  • Sulfates
  • Sulfuric Acid Esters
  • Acetic Acid
  • methyl sulfate