SL1 trans-splicing specified by AU-rich synthetic RNA inserted at the 5' end of Caenorhabditis elegans pre-mRNA

RNA. 1995 Apr;1(2):164-70.

Abstract

In Caenorhabditis elegans, pre-mRNAs of many genes are trans-spliced to one of two spliced leaders, SL1 or SL2. Some of those that receive exclusively SL1 have been characterized as having at their 5' ends outrons, AU-rich sequences similar to introns followed by conventional 3' splice sites. Comparison of outrons from many different SL1-specific C. elegans genes has not revealed the presence of any consensus sequence that might encode SL1-specificity. In order to determine what parameters influence the splicing of SL1, we performed in vivo experiments with synthetic splice sites. Synthetic AU-rich RNA, 51 nt or longer, placed upstream of a consensus 3' splice site resulted in efficient trans-splicing. With all sequences tested, this trans-splicing was specifically to SL1. Thus, no information beyond the presence of AU-rich RNA at least as long as the minimum-length C. elegans intron, followed by a 3' splice site, is required to specify trans-splicing or for strict SL1 specificity.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Adenine / chemistry
  • Animals
  • Base Sequence
  • Binding Sites
  • Caenorhabditis elegans / genetics*
  • DNA Primers
  • Genes, Helminth*
  • Helminth Proteins / chemistry
  • Introns
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • RNA Precursors / chemistry*
  • RNA Splicing*
  • RNA, Helminth / chemistry*
  • RNA, Messenger / chemistry*
  • Uracil / chemistry

Substances

  • DNA Primers
  • Helminth Proteins
  • RNA Precursors
  • RNA, Helminth
  • RNA, Messenger
  • Uracil
  • Adenine