Features of the cellodextrinase gene from Fibrobacter succinogenes S85

Can J Microbiol. 1994 Jul;40(7):592-6. doi: 10.1139/m94-094.

Abstract

The nucleotide sequence of a 2.3-kb DNA fragment containing a cellodextrinase gene (cedA) from the ruminal anaerobe Fibrobacter succinogenes S85 was determined. Activity was expressed from this fragment when it was cloned in both orientations in pBluescript KS+ and SK-, indicating a functional F. succinogenes promoter in Escherichia coli. Promoter sequences (TTGAACA and AATAA) were identified upstream of the ATG initiation codon preceded by a putative ribosome binding site. The cedA open reading frame of 1071 base pairs encoded a protein of 357 amino acid residues with a calculated molecular mass of 41.9 kDa, similar to the 40-kDa size of the native protein as determined by gel filtration chromatography. CedA is proposed to belong to family 5 (family A) of the glycosyl hydrolases. The primary structure of the cellodextrinase showed over 40% similarity with endoglucanase 3 from F. succinogenes S85. Short regions of similarity were also demonstrated with endoglucanase C from Clostridium thermocellum, CelA from Ruminococcus flavefaciens, and two exoglucanases from yeast.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Bacterial Proteins*
  • Base Sequence
  • Cellulase / genetics*
  • Cloning, Molecular
  • Escherichia coli
  • Genes, Bacterial*
  • Gram-Negative Anaerobic Bacteria / genetics*
  • Molecular Sequence Data

Substances

  • Bacterial Proteins
  • ced1 protein, Butyrivibrio fibrisolvens
  • Cellulase

Associated data

  • GENBANK/U07419