Modified radical neck or combined radical and modified radical neck surgery is performed for treatment of head and neck cancer. Because of the extensive nature of the surgery, including dissection around the carotid vessels, we prospectively evaluated hypoxic ventilatory responses preoperatively and postoperatively in five patients. The change in ventilation to percent desaturation varied between -0.22 and -0.60 L/min per percent desaturation in the five study patients. In the postoperative evaluation, two of five patients showed flattened responses compared with the preoperative measurements due to denervation of their carotid bodies. Two patients showed increased responses due to loss of upper airway resistance from tracheostomy. We conclude that after bilateral neck dissection for cancer surgery some patients may lose their hypoxic ventilatory responses due to carotid body denervation.