Replication protein A induces the unwinding of long double-stranded DNA regions

J Mol Biol. 1996 May 31;259(1):104-12. doi: 10.1006/jmbi.1996.0305.

Abstract

We have investigated nucleoprotein filaments composed of human replication protein A (RPA) and DNA by electron microscopy. At low ionic strengths, RPA complexes with single-stranded DNA are similar in length to protein-free DNA suggesting that RPA-bound DNA remains in an extended configuration under these conditions. However, severe compaction of RPA-DNA complexes occurs in buffers with > 2 mM MgCl2 or with 100 mM NaCl. At low ionic strengths, RPA binds to A + T-rich internal regions of linear double-stranded simian virus 40 (SV40) DNA and induces separation of complementary DNA strands. RPA also binds to closed-circular SV40 DNA, but requires the function of a DNA topoisomerase to invade and completely unwind duplex DNA regions. The ability of RPA to unwind long stretches of double-stranded DNA is not shared by the bacterial single-strand binding protein and the phage T4 gene 32 protein.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacteriophage M13 / genetics
  • DNA / chemistry*
  • DNA / metabolism
  • DNA, Circular / chemistry
  • DNA, Circular / metabolism
  • DNA, Single-Stranded / chemistry
  • DNA, Single-Stranded / metabolism
  • DNA, Viral / chemistry
  • DNA, Viral / metabolism
  • DNA-Binding Proteins / chemistry
  • DNA-Binding Proteins / metabolism*
  • Humans
  • Microscopy, Electron
  • Models, Biological
  • Models, Molecular
  • Nucleic Acid Conformation
  • Replication Protein A
  • Simian virus 40 / genetics

Substances

  • DNA, Circular
  • DNA, Single-Stranded
  • DNA, Viral
  • DNA-Binding Proteins
  • RPA1 protein, human
  • Replication Protein A
  • DNA