Progress of 1D protein structure prediction at last

Proteins. 1995 Nov;23(3):295-300. doi: 10.1002/prot.340230304.

Abstract

Accuracy of predicting protein secondary structure and solvent accessibility from sequence information has been improved significantly by using information contained in multiple sequence alignments as input to a neural network system. For the Asilomar meeting, predictions for 13 proteins were generated automatically using the publicly available prediction method PHD. The results confirm the estimate of 72% three-state prediction accuracy. The fairly accurate predictions of secondary structure segments made the tool useful as a starting point for modeling of higher dimensional aspects of protein structure.

MeSH terms

  • Amino Acid Sequence
  • Bacterial Proteins*
  • Computer Communication Networks
  • DNA-Binding Proteins / chemistry
  • Drosophila Proteins*
  • Molecular Sequence Data
  • Neural Networks, Computer
  • Protein Structure, Secondary*
  • RNA-Binding Proteins / chemistry
  • Sequence Alignment
  • Subtilisins / chemistry

Substances

  • Bacterial Proteins
  • DNA-Binding Proteins
  • Drosophila Proteins
  • RNA-Binding Proteins
  • rtP protein, Bacillus subtilis
  • stau protein, Drosophila
  • Subtilisins