Inkoo and Tahyna, the European California serogroup bunyaviruses: sequence and phylogeny of the S RNA segment

J Gen Virol. 1996 Aug:77 ( Pt 8):1769-74. doi: 10.1099/0022-1317-77-8-1769.

Abstract

Inkoo (INK) and Tahyna (TAH) viruses, European representatives of the California serogroup (CAL), genus Bunyavirus, family Bunyaviridae, are transmitted by mosquitoes and frequently infect man. The S segments of INK and TAH prototype strains were amplified, cloned and sequenced. INK S consists of 986 and TAH S of 977 nucleotides (nt) coding for a nucleocapsid protein of 235 amino acids (aa) and, in an overlapping reading frame, for a nonstructural protein of 92 or 97 aa, respectively. By S segment sequences and phylogenetic analysis INK was seen to be most closely related to Jamestown Canyon virus, isolated in the USA (92.4% nt and 96.6% aa identity), which is currently classified in a different subcomplex within the CAL viruses. TAH was genetically closest to Lumbo virus, isolated in Mozambique (89.0% nt and 94.1% aa identity). The data suggest that genetic variation within the CAL viruses is less related to geographical distance than to similarity in ecological cycles.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Capsid / genetics
  • DNA, Viral
  • Encephalitis Virus, California / classification
  • Encephalitis Virus, California / genetics*
  • Europe
  • Molecular Sequence Data
  • Phylogeny
  • RNA, Viral*
  • Viral Core Proteins / genetics
  • Viral Nonstructural Proteins / genetics

Substances

  • DNA, Viral
  • RNA, Viral
  • Viral Core Proteins
  • Viral Nonstructural Proteins

Associated data

  • GENBANK/Z68496
  • GENBANK/Z68497