Activated levels of rRNA synthesis in fission yeast are driven by an intergenic rDNA region positioned over 2500 nucleotides upstream of the initiation site

Nucleic Acids Res. 1997 Feb 1;25(3):659-67. doi: 10.1093/nar/25.3.659.

Abstract

RNA polymerase I-catalyzed synthesis of the Schizosaccharomyces pombe approximately 37S pre-rRNAs was shown to be sensitive to regulatory sequences located several kilobases upstream of the initiation site for the rRNA gene. An in vitro transcription system for RNA polymerase I-catalyzed RNA synthesis was established that supports correct and activated transcription from templates bearing a full S. pombe rRNA gene promoter. A 780 bp region starting at -2560 significantly stimulates transcription of ac is-located rDNA promoter and competes with an rDNA promoter in trans, thus displaying some of the activities of rDNA transcriptional enhancers in vitro. Deletion of a 30 bp enhancer-homologous domain in this 780 bp far upstream region blocked its cis-stimulatory effect. The sequence of the S. pombe 3.5 kb intergenic spacer was determined and its organization differs from that of vertebrate, Drosophila, Acanthamoeba and plant intergenic rDNA spacers: it does not contain multiple, imperfect copies of the rRNA gene promoter nor repetitive elements of 140 bp, as are found in vertebrate rDNA enhancers.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Animals
  • Base Sequence
  • DNA, Fungal
  • DNA, Ribosomal*
  • Enhancer Elements, Genetic
  • Molecular Sequence Data
  • Nucleotides
  • Peptide Chain Initiation, Translational
  • Promoter Regions, Genetic
  • RNA, Fungal / biosynthesis*
  • RNA, Ribosomal / biosynthesis*
  • Regulatory Sequences, Nucleic Acid
  • Schizosaccharomyces / genetics*
  • Transcription, Genetic

Substances

  • DNA, Fungal
  • DNA, Ribosomal
  • Nucleotides
  • RNA, Fungal
  • RNA, Ribosomal

Associated data

  • GENBANK/Y09256
  • GENBANK/Z19578