A 460-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 40.1-50.0 min region on the linkage map

DNA Res. 1996 Dec 31;3(6):379-92. doi: 10.1093/dnares/3.6.379.

Abstract

The 465,813 base pair sequence corresponding to the 40.1-50.0 min region on the genetic map of Escherichia coli K-12 (W3110) was determined. Analysis of the sequence revealed that this region contained at least 466 potential open reading frames, of which 187 (40%) were previously reported, 105 (23%) were homologous to other known genes, 103 (22%) were identical or similar to hypothetical genes registered in databases, and the remaining 71 (15%) did not show a significant similarity to any other gene. At the 45.2-46.0 min region, we found a very large cluster of about 30 genes, whose functions are involved in the biosynthesis of polysaccharides as the components of outer membranes. In addition, we identified a new asn-tRNA gene, designated asnW, between the asnT and asnU genes and a new lysogenic phage attachment site as the cis-element.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Attachment Sites, Microbiological
  • Chromosome Mapping*
  • DNA, Bacterial / genetics
  • Escherichia coli / genetics*
  • Genes, Bacterial / genetics*
  • Multigene Family
  • Open Reading Frames
  • RNA, Transfer, Asn / genetics
  • Replicon
  • Sequence Analysis, DNA*
  • Sequence Homology, Amino Acid

Substances

  • DNA, Bacterial
  • RNA, Transfer, Asn

Associated data

  • GENBANK/D90822
  • GENBANK/D90824
  • GENBANK/D90825
  • GENBANK/D90826
  • GENBANK/D90827
  • GENBANK/D90828
  • GENBANK/D90829
  • GENBANK/D90830
  • GENBANK/D90831
  • GENBANK/D90832
  • GENBANK/D90833
  • GENBANK/D90834
  • GENBANK/D90835
  • GENBANK/D90836
  • GENBANK/D90837
  • GENBANK/D90838
  • GENBANK/D90839
  • GENBANK/D90840
  • GENBANK/D90841
  • GENBANK/D90842
  • GENBANK/D90843
  • GENBANK/D90844
  • GENBANK/D90845
  • GENBANK/D90846
  • GENBANK/D90847
  • GENBANK/D90848
  • GENBANK/D90849
  • GENBANK/D90850
  • GENBANK/D90851