A contiguous 60 kb genomic stretch from barley reveals molecular evidence for gene islands in a monocot genome

Nucleic Acids Res. 1998 Feb 15;26(4):1056-62. doi: 10.1093/nar/26.4.1056.

Abstract

The contiguous DNA sequence of a 60 kb genomic interval of barley chromosome 4HL has been assembled. The region harbours a single and novel gypsy -like retrotransposon, designated BAGY-1. Only three genes appear to reside in the genomic stretch. One predicts a plant homologue of ribophorin I, a subunit of the oligosaccharyltransferase-protein complex located in the rough endoplasmatic reticulum. The second is similar to the Drosophila g1 gene encoding a ring finger protein involved in developmental processes. The observed gene density is approximately 5-fold lower than in the best characterized dicot genome of Arabidopsis but 6- to 10-fold higher than expected from an equidistant gene distribution in the complex barley genome. Our data suggest that the 60 kb genomic interval represents part of a gene island, a seemingly distinctive feature of grass genomes.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Arabidopsis / genetics
  • Base Composition
  • CpG Islands*
  • DNA, Plant / genetics*
  • Drosophila / genetics
  • Gene Expression
  • Genes, Insect
  • Genes, Plant
  • Genome, Plant*
  • Hordeum / genetics*
  • Humans
  • Introns
  • Molecular Sequence Data
  • Retroelements
  • Species Specificity
  • Zea mays / genetics

Substances

  • DNA, Plant
  • Retroelements

Associated data

  • GENBANK/Y14573