The Leu-3 residue of Serratia marcescens metalloprotease inhibitor is important in inhibitory activity and binding with Serratia marcescens metalloprotease

Arch Biochem Biophys. 1998 Apr 1;352(1):37-43. doi: 10.1006/abbi.1997.0561.

Abstract

Serratia marcescens metalloprotease inhibitor (SmaPI) is a proteinase inhibitor toward Serratia marcescens metalloprotease (SMP). In sequential deletion analysis of the N-terminal region of the SmaPI, SmaPIs starting at Ser-2 and Leu-3 residues, respectively, had nearly a full inhibitory activity toward SMP. However, SmaPI starting at Ala-4 residue showed severely decreased inhibitory activity. Furthermore, kinetic analysis demonstrated that SmaPI starting at the Ala-4 residue had an inhibition constant for SMP approximately fourfold higher than that of wild-type SmaPI. The interactions of Leu-3 with SMP contribute 0.73 kcal mol-1 to the overall stability of the SMP-SmaPI complex (8.44 kcal mol-1). To elucidate the detailed role of the Leu-3 residue in inhibitory activity of SmaPI, several site-directed mutations were introduced. The inhibitory activities of Leu-3 mutants in which the Leu-3 has been converted to Ala, Asp, Gly, Ile, Lys, Phe, or Pro were correlated with the hydrophobicities of substituted amino acids. About 0.3 kcal mol-1 is attributable to the side chain of the Leu-3 residue in the binding with SMP. From these results, it is suggested that (i) in contrast with the Erwinia chrysanthemi inhibitor, Gly-1 and Ser-2 of SmaPI are not critical and (ii) the hydrophobicity of Leu-3 may be important in its inhibitory activity and binding with SMP.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism*
  • Base Sequence
  • Binding Sites
  • DNA Primers / genetics
  • Dickeya chrysanthemi / genetics
  • Dickeya chrysanthemi / metabolism
  • Kinetics
  • Leucine / chemistry
  • Metalloendopeptidases / antagonists & inhibitors*
  • Metalloendopeptidases / metabolism
  • Molecular Sequence Data
  • Mutagenesis, Site-Directed
  • Protease Inhibitors / chemistry*
  • Protease Inhibitors / metabolism*
  • Sequence Deletion
  • Sequence Homology, Amino Acid
  • Serratia marcescens / enzymology
  • Serratia marcescens / genetics
  • Serratia marcescens / metabolism*
  • Thermodynamics

Substances

  • Bacterial Proteins
  • DNA Primers
  • Protease Inhibitors
  • SmaPI protein, Serratia marcescens
  • Metalloendopeptidases
  • S. marcescens minor metalloproteinase
  • Leucine