Microplate-reverse hybridization method to determine dengue virus serotype

J Virol Methods. 1998 Aug;73(2):229-35. doi: 10.1016/s0166-0934(98)00040-8.

Abstract

A reverse transcriptase-polymerase chain reaction (RT-PCR) and microplate-reverse hybridization method were developed to detect and type dengue viruses in patients plasma specimens. A silica method was used to isolate RNA; and 3'-noncoding region universal primers were used to amplify dengue virus RNA. Using RT-PCR and ethidium bromide staining we could detect dengue virus in serum spiked with serially diluted dengue virus with a level of sensitivity similar to that of a quantitative fluorescent focus assay of dengue viruses in cell culture, i.e. 1.4 fluorescent focus units per reaction. Applying this assay to 14 dengue-positive plasma samples and 13 dengue-negative samples, dengue viremia was detectable by RT-PCR with a sensitivity comparable to mosquito inoculation. To determine the serotypes, digoxigenin-labeled PCR products from plasma samples and six laboratory adapted dengue viruses were hybridized in stringent conditions to serotype-specific DNA probes immobilized on microplates, and the hybridized product was detected with a colorimetric assay. Serotypes of dengue viruses, in cell culture and in patient plasma specimens, were identified using this method.

MeSH terms

  • Dengue / virology
  • Dengue Virus / classification*
  • Dengue Virus / isolation & purification*
  • Ethidium
  • Humans
  • RNA, Viral / blood
  • Reverse Transcriptase Polymerase Chain Reaction*
  • Sensitivity and Specificity
  • Serotyping
  • Staining and Labeling

Substances

  • RNA, Viral
  • Ethidium