Application of the ribonuclease P (RNase P) RNA gene sequence for phylogenetic analysis of the genus Saccharomonospora

Int J Syst Bacteriol. 1998 Oct:48 Pt 4:1223-30. doi: 10.1099/00207713-48-4-1223.

Abstract

Sequences of the RNase P RNA gene were investigated for the phylogenetic analysis of the genus Saccharomonospora. Aligned nucleotide sequences, determined from the PCR-amplified RNase P RNA gene of representative strains of the genus Saccharomonospora, displayed 94.2 +/- 1.3% interspecific variances. The intraspecific similarity value was 99.7-100% in all species tested. Saccharomonospora azurea K161T and 'Saccharomonospora caesia' K76T displayed identical RNase P RNA gene sequences in the region that was determined and Saccharomonospora sp. K180 showed sequences distinct from validly described species with a similarity value of 94.6 +/- 1.0%. The phylogenetic trees constructed by aligning the sequences either within the genus Saccharomonospora or with other Gram-positive bacteria were similar to the ones derived using sequences of the 16S rDNA gene. Advantageous features of this gene for application as a molecular phyletic marker are discussed.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Actinomycetales / classification*
  • Actinomycetales / genetics*
  • Bacterial Typing Techniques
  • Base Sequence
  • Endoribonucleases / genetics*
  • Molecular Sequence Data
  • Phylogeny*
  • Polymerase Chain Reaction / methods
  • RNA, Bacterial / genetics*
  • RNA, Catalytic / genetics*
  • Ribonuclease P
  • Species Specificity

Substances

  • RNA, Bacterial
  • RNA, Catalytic
  • Endoribonucleases
  • Ribonuclease P

Associated data

  • GENBANK/AF012792
  • GENBANK/AF012793
  • GENBANK/AF012794
  • GENBANK/AF012795
  • GENBANK/AF012796
  • GENBANK/AF012797
  • GENBANK/AF012798
  • GENBANK/AF012799
  • GENBANK/AF012800
  • GENBANK/AF012801
  • GENBANK/AF012802
  • GENBANK/AF012803
  • GENBANK/AF012804
  • GENBANK/AF012805
  • GENBANK/AF012806
  • GENBANK/AF012807
  • GENBANK/AF012808