Mhc class I and non-class I gene organization in the proximal H2-M region of the mouse

Immunogenetics. 1999 Mar;49(3):183-95. doi: 10.1007/s002510050479.

Abstract

A bacterial artificial chromosome (BAC) contig was constructed across the proximal part of the H2-M region from the major histocompatibility complex (Mhc) of mouse strain 129 (H2bc). The contig is composed of 28 clones that span approximately 1 megabasepair (Mb), from H2-T1 to Mog, and contains three H2-T genes and 18 H2-M genes. We report the fine mapping of the H2-M class I gene cluster, which includes the previously reported M4-M6, the M1 family, the M10 family, and four additional class I genes. All but two of the H2-M class I genes are conserved among haplotypes H2k, H2b, and H2bc, and only two genes are found in polymorphic HindIII fragments. Six evolutionarily conserved non-class I genes were mapped to a 180 kilobase interval in the distal part of the class I region in mouse, and their order Znf173-Rfb30-Tctex5-Tctex6- Tctex4-Mog was found conserved between human and mouse. In this Znf173-Mog interval, three mouse class I genes, M6, M4, and M5, which are conserved among haplotypes, occupy the same map position as the human HLA-A class I cluster, which varies among haplotypes and is diverged in sequence from the mouse genes. These results further support the view that class I gene diverge and evolve independently between species.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Animals
  • Blotting, Southern
  • Chromosomes, Artificial, Yeast / genetics
  • Chromosomes, Bacterial / genetics
  • Cloning, Molecular
  • Conserved Sequence / genetics*
  • Databases, Factual
  • Evolution, Molecular
  • Expressed Sequence Tags
  • Genes, MHC Class I / genetics*
  • Genetic Markers / genetics
  • Genetic Vectors
  • HLA-A Antigens / genetics
  • HLA-D Antigens / genetics*
  • Haplotypes / genetics
  • Histocompatibility Antigens Class II*
  • Humans
  • Major Histocompatibility Complex / genetics*
  • Mice
  • Molecular Sequence Data
  • Physical Chromosome Mapping*
  • Sequence Analysis, DNA
  • Sequence Tagged Sites

Substances

  • Genetic Markers
  • H2-M antigens
  • HLA-A Antigens
  • HLA-D Antigens
  • HLA-DM antigens
  • Histocompatibility Antigens Class II

Associated data

  • GENBANK/B88386
  • GENBANK/B88387
  • GENBANK/B88388
  • GENBANK/B88389
  • GENBANK/B88390
  • GENBANK/B88391
  • GENBANK/B88392
  • GENBANK/B88393
  • GENBANK/B88394
  • GENBANK/B88395
  • GENBANK/B88396
  • GENBANK/B88397
  • GENBANK/B88398
  • GENBANK/B88399
  • GENBANK/B88400
  • GENBANK/B88401
  • GENBANK/B88402
  • GENBANK/B88403
  • GENBANK/B88404
  • GENBANK/B88405
  • GENBANK/B88406
  • GENBANK/B88407
  • GENBANK/B88408