Ruczinski I - Search Results

1

Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins.

Simons KT, Ruczinski I, Kooperberg C, Fox BA, Bystroff C, Baker D. Simons KT, et al. Among authors: ruczinski i. Proteins. 1999 Jan 1;34(1):82-95. doi: 10.1002/(sici)1097-0134(19990101)34:1<82::aid-prot7>3.0.co;2-a. Proteins. 1999. PMID: 10336385

2

Ab initio protein structure prediction of CASP III targets using ROSETTA.

Simons KT, Bonneau R, Ruczinski I, Baker D. Simons KT, et al. Among authors: ruczinski i. Proteins. 1999;Suppl 3:171-6. doi: 10.1002/(sici)1097-0134(1999)37:3+<171::aid-prot21>3.3.co;2-q. Proteins. 1999. PMID: 10526365

3

Experiment and theory highlight role of native state topology in SH3 folding.

Riddle DS, Grantcharova VP, Santiago JV, Alm E, Ruczinski I, Baker D. Riddle DS, et al. Among authors: ruczinski i. Nat Struct Biol. 1999 Nov;6(11):1016-24. doi: 10.1038/14901. Nat Struct Biol. 1999. PMID: 10542092

4

Evolutionary conservation in protein folding kinetics.

Plaxco KW, Larson S, Ruczinski I, Riddle DS, Thayer EC, Buchwitz B, Davidson AR, Baker D. Plaxco KW, et al. Among authors: ruczinski i. J Mol Biol. 2000 Apr 28;298(2):303-12. doi: 10.1006/jmbi.1999.3663. J Mol Biol. 2000. PMID: 10764599

5

Topology, stability, sequence, and length: defining the determinants of two-state protein folding kinetics.

Plaxco KW, Simons KT, Ruczinski I, Baker D. Plaxco KW, et al. Among authors: ruczinski i. Biochemistry. 2000 Sep 19;39(37):11177-83. doi: 10.1021/bi000200n. Biochemistry. 2000. PMID: 10985762 Review.

6

Functional inferences from blind ab initio protein structure predictions.

Bonneau R, Tsai J, Ruczinski I, Baker D. Bonneau R, et al. Among authors: ruczinski i. J Struct Biol. 2001 May-Jun;134(2-3):186-90. doi: 10.1006/jsbi.2000.4370. J Struct Biol. 2001. PMID: 11551178 Review.

7

Sequence analysis using logic regression.

Kooperberg C, Ruczinski I, LeBlanc ML, Hsu L. Kooperberg C, et al. Among authors: ruczinski i. Genet Epidemiol. 2001;21 Suppl 1:S626-31. doi: 10.1002/gepi.2001.21.s1.s626. Genet Epidemiol. 2001. PMID: 11793751

8

Rosetta in CASP4: progress in ab initio protein structure prediction.

Bonneau R, Tsai J, Ruczinski I, Chivian D, Rohl C, Strauss CE, Baker D. Bonneau R, et al. Among authors: ruczinski i. Proteins. 2001;Suppl 5:119-26. doi: 10.1002/prot.1170. Proteins. 2001. PMID: 11835488

9

Distributions of beta sheets in proteins with application to structure prediction.

Ruczinski I, Kooperberg C, Bonneau R, Baker D. Ruczinski I, et al. Proteins. 2002 Jul 1;48(1):85-97. doi: 10.1002/prot.10123. Proteins. 2002. PMID: 12012340

10

Contact order and ab initio protein structure prediction.

Bonneau R, Ruczinski I, Tsai J, Baker D. Bonneau R, et al. Among authors: ruczinski i. Protein Sci. 2002 Aug;11(8):1937-44. doi: 10.1110/ps.3790102. Protein Sci. 2002. PMID: 12142448 Free PMC article.

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