Fajardo JE - Search Results

1

Homology-based annotation yields 1,042 new candidate genes in the Drosophila melanogaster genome.

Gopal S, Schroeder M, Pieper U, Sczyrba A, Aytekin-Kurban G, Bekiranov S, Fajardo JE, Eswar N, Sanchez R, Sali A, Gaasterland T. Gopal S, et al. Among authors: fajardo je. Nat Genet. 2001 Mar;27(3):337-40. doi: 10.1038/85922. Nat Genet. 2001. PMID: 11242120

2

High-throughput computational and experimental techniques in structural genomics.

Chance MR, Fiser A, Sali A, Pieper U, Eswar N, Xu G, Fajardo JE, Radhakannan T, Marinkovic N. Chance MR, et al. Among authors: fajardo je. Genome Res. 2004 Oct;14(10B):2145-54. doi: 10.1101/gr.2537904. Genome Res. 2004. PMID: 15489337 Free PMC article.

3

Structure of a putative BenF-like porin from Pseudomonas fluorescens Pf-5 at 2.6 A resolution.

Sampathkumar P, Lu F, Zhao X, Li Z, Gilmore J, Bain K, Rutter ME, Gheyi T, Schwinn KD, Bonanno JB, Pieper U, Fajardo JE, Fiser A, Almo SC, Swaminathan S, Chance MR, Baker D, Atwell S, Thompson DA, Emtage JS, Wasserman SR, Sali A, Sauder JM, Burley SK. Sampathkumar P, et al. Among authors: fajardo je. Proteins. 2010 Nov 1;78(14):3056-62. doi: 10.1002/prot.22829. Proteins. 2010. PMID: 20737437 Free PMC article.

4

Identification and characterization of a high-affinity interaction between v-Crk and tyrosine-phosphorylated paxillin in CT10-transformed fibroblasts.

Birge RB, Fajardo JE, Reichman C, Shoelson SE, Songyang Z, Cantley LC, Hanafusa H. Birge RB, et al. Among authors: fajardo je. Mol Cell Biol. 1993 Aug;13(8):4648-56. doi: 10.1128/mcb.13.8.4648-4656.1993. Mol Cell Biol. 1993. PMID: 7687742 Free PMC article.

5

A 31-amino-acid N-terminal extension regulates c-Crk binding to tyrosine-phosphorylated proteins.

Fajardo JE, Birge RB, Hanafusa H. Fajardo JE, et al. Mol Cell Biol. 1993 Dec;13(12):7295-302. doi: 10.1128/mcb.13.12.7295-7302.1993. Mol Cell Biol. 1993. PMID: 7504172 Free PMC article.

6

Integrated structure-based protein interface prediction.

Walder M, Edelstein E, Carroll M, Lazarev S, Fajardo JE, Fiser A, Viswanathan R. Walder M, et al. Among authors: fajardo je. BMC Bioinformatics. 2022 Jul 25;23(1):301. doi: 10.1186/s12859-022-04852-2. BMC Bioinformatics. 2022. PMID: 35879651 Free PMC article.

7

Protein structure based prediction of catalytic residues.

Fajardo JE, Fiser A. Fajardo JE, et al. BMC Bioinformatics. 2013 Feb 22;14:63. doi: 10.1186/1471-2105-14-63. BMC Bioinformatics. 2013. PMID: 23433045 Free PMC article.

8

MMM: a sequence-to-structure alignment protocol.

Rai BK, Madrid-Aliste CJ, Fajardo JE, Fiser A. Rai BK, et al. Among authors: fajardo je. Bioinformatics. 2006 Nov 1;22(21):2691-2. doi: 10.1093/bioinformatics/btl449. Epub 2006 Aug 23. Bioinformatics. 2006. PMID: 16928737

9

M4T: a comparative protein structure modeling server.

Fernandez-Fuentes N, Madrid-Aliste CJ, Rai BK, Fajardo JE, Fiser A. Fernandez-Fuentes N, et al. Among authors: fajardo je. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W363-8. doi: 10.1093/nar/gkm341. Epub 2007 May 21. Nucleic Acids Res. 2007. PMID: 17517764 Free PMC article.

10

Comparative protein structure modeling by combining multiple templates and optimizing sequence-to-structure alignments.

Fernandez-Fuentes N, Rai BK, Madrid-Aliste CJ, Fajardo JE, Fiser A. Fernandez-Fuentes N, et al. Among authors: fajardo je. Bioinformatics. 2007 Oct 1;23(19):2558-65. doi: 10.1093/bioinformatics/btm377. Epub 2007 Sep 6. Bioinformatics. 2007. PMID: 17823132

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